Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PCPG rs7617061 chr3:80555739 T/A 2.79E-5 177 19.53 24.77 27.2 KM Plot
PCPG rs7617324 chr3:80555993 T/A 2.79E-5 177 19.53 24.77 27.2 KM Plot
PCPG rs76176186 chr16:71689992 AC/A 9.42E-6 174 24.23 32.03 14.5 KM Plot
PCPG rs7618534 chr3:129055995 T/C 0.000333 176 25.67 25.27 10.3 KM Plot
PCPG rs7619779 chr3:80556321 T/C 2.79E-5 177 19.53 24.77 27.2 KM Plot
PCPG rs7619973 chr3:80556552 T/A 2.79E-5 177 19.53 24.77 27.2 KM Plot
PCPG rs7621792 chr3:80601282 C/T 0.000113 174 19.53 23.53 27.2 KM Plot
PCPG rs7622284 chr3:39240559 C/T 2.91E-7 178 25.28 27 21.98 KM Plot
PCPG rs76246461 chr7:158650087 G/A 0 176 25.53 19.83 3.17 KM Plot
PCPG rs7626170 chr3:80597507 G/A 0.00013 176 19.87 24.53 27.4 KM Plot
PCPG rs7627462 chr3:53087621 A/G 6.43E-6 175 11.78 20.13 25.77 KM Plot
PCPG rs76275146 chr11:2247371 T/C 0.00018 177 25 25.77 85.88 KM Plot
PCPG rs7630175 chr3:80556398 A/C 2.79E-5 177 19.53 24.77 27.2 KM Plot
PCPG rs76302537 chr1:36920816 A/T 7.31E-5 178 25.4 26.62 10.3 KM Plot
PCPG rs76304381 chr7:36156690 C/T 0.000433 178 25.77 24.5 14.37 KM Plot